Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs6544873 chr2:46371754 C/T 0.000121 503 31.37 36.17 11.73 KM Plot
THCA rs6547885 chr2:29077531 A/G 0.000137 503 38.87 30.93 31.68 KM Plot
THCA rs6547886 chr2:29077655 A/G 0.000137 503 38.87 30.93 31.68 KM Plot
THCA rs6561542 chr13:50127520 T/C 1.75E-5 501 34.52 30.37 31.75 KM Plot
THCA rs6564239 chr16:75253804 T/A 1.29E-5 487 31.1 32.22 31.47 KM Plot
THCA rs6569847 chr6:133083187 C/A 1.43E-11 492 31.53 31.13 30.53 KM Plot
THCA rs6569848 chr6:133087432 A/G 8.94E-12 499 31.5 32.43 27.03 KM Plot
THCA rs6569852 chr6:133108333 C/A 1.99E-6 498 31.43 35.6 29.05 KM Plot
THCA rs6600366 chr1:41559612 C/T 1.26E-7 501 27.33 30.43 31.92 KM Plot
THCA rs66462982 chr9:16867042 G/A 6.92E-5 495 31.47 29.5 30.53 KM Plot
THCA rs66638809 chr20:25273706 T/C 5.74E-5 501 31.47 30.65 49.03 KM Plot
THCA rs6669542 chr1:41525770 T/G 1.2E-7 502 27.33 30.48 31.92 KM Plot
THCA rs6669737 chr1:41525890 T/C 1.2E-7 502 27.33 30.43 31.93 KM Plot
THCA rs6674290 chr1:41561232 C/G 1.2E-7 502 27.33 30.43 31.93 KM Plot
THCA rs6688309 chr1:41558840 G/A 1.33E-7 500 27.33 30.48 31.92 KM Plot